Thanks Bjorn - I think I was just describing my problem very poorly...!
Hopefully this image works;
[img width=200 height=71]http://i.imgur.com/bYcMsER.png[/img]
Assuming all of these boundaries are defined in supermesh, I want to select the region indicated in blue, from the 'complex boundary' to the 'bottom of model'.
The idea being that, complex geometries or boundaries presented by different geological facies can be selected and adjusted.