The fluid-flux analyzer (in FEFLOW 5.x and 6.0 Classic) does an integration of the flow based on the resulting velocity field. At no-flow boundaries, the velocities that are calculated are typically not exactly parallel to the boundary (due to spatial discretization). In this case, the fluid flux analyzer will show inflow or outlflow at such boundaries. The finer the discretization at the boundary is, the lower the flow values should be. In general, it is better to use the Budget Analyzer for checking on boundary flows. The fluid-flux analyzer is intended for internal flows where the methodology of the Budget Analyzer does not work (yet).