As FEFLOW as a numerical code is based on spatial discretization, there is always an influence of the size of the mesh elements on the head at a well. This is the case for any numerical groundwater model. In most cases you will not be interested in the exact hydraulic head at the well node. In this case, you can simply use a well bc. If you want to get exact heads for such a boundary condition, the mesh elements around the well nodes should have the size of the well diameter ('equivalent well diameter'). However, in cases where you would like to study the surroundings of a well even more in detail, e.g., to determing fluxes into the well from different sides with different material properties, it might be the better option to discretize even finer and use a flux boundary condition instead.